[1] M. Xu. Superposition rule for light scattering by a composite particle. Opt. Lett., 31:3223-3225, 2006.
[2] M. Alrubaiee, M. Xu, S. K. Gayen, and R. R. Alfano. Localization and cross section reconstruction of fluorescent targets in ex vivo breast tissue using independent component analysis. Appl. Phys. Lett., 89:133902, 2006.
[3] M. Xu, M. Alrubaiee, S. K. Gayen, and R. R. Alfano. Three-dimensional localization and optical imaging of objects in turbid media using independent component analysis. Appl. Opt., 44:1889-1897, 2005. [ .pdf ]
A new approach for optical imaging and localization of objects in turbid media that makes use of the independent component analysis (ICA) from information theory is demonstrated. Experimental arrangement realizes a multi-source illumination of a turbid medium with embedded objects, and a multi-detector acquisition of transmitted light on the medium boundary. The resulting spatial diversity and multiple angular observations provide robust data for three-dimensional localization and characterization of absorbing and scattering inhomogeneities embedded in a tissue-like turbid medium. ICA of the perturbations in the spatial intensity distribution on the medium boundary sorts out the embedded objects and their locations are obtained from Green's function analysis based on any appropriate light propagation model. Imaging experiments were carried out on two human breast tissue simulating homogeneous turbid media of thickness approximately 50 times the transport mean free path of the medium with two embedded absorptive objects in one, and four scattering objects in the other. An independent component separation of the signal, in conjunction with diffusive photon migration theory was used to locate the embedded inhomogeneities. In both the cases, improved lateral and axial localization of the objects over the result obtained using common photon migration reconstruction algorithms were achieved. The approach is applicable for different medium geometries, can be used with any suitable photon propagation model, and is amenable to near real time imaging applications.

[4] M. Xu, M. Alrubaiee, S. K. Gayen, and R. R. Alfano. Optical imaging of turbid media using independent component analysis: Theory and simulation. J. Biomed. Opt., 10:051705, 2005.
A new imaging approach for three-dimensional localization and characterization of objects in a turbid medium using independent component analysis (ICA) from information theory is developed and demonstrated using simulated data. This approach uses a multi-source and multi-detector signal acquisition scheme. Independent component analysis of the perturbations in the spatial intensity distribution measured on the medium boundary sorts out the embedded objects. The locations and optical characteristics of the embedded objects are obtained from a Green's function analysis based on any appropriate model for light propagation in the background medium. This approach is shown to locate and characterize absorptive and scattering inhomogeneities within highly scattering medium to a high degree of accuracy. In particular, we show this approach can discriminate between absorptive and scattering inhomogeneities, and can locate and characterize complex inhomogeneities which is both absorptive and scattering. The influence of noise and uncertainty in background absorption or scattering on the performance of this approach is investigated.

[5] M. Xu and R. R. Alfano. Random walk of polarized light in turbid media. Phys. Rev. Lett., 95:213905, 2005.
We study the propagation of polarized light in turbid media as a random walk of vector photons. The second order statistics of the polarization and propagation directions of polarized light vs the number n of scattering events in the direction space is shown to be characterized by two eigenvalues λ for Mie scatterers of arbitrary size and refractive index. Both light polarization and directionality anisotropies decay as a powerlaw of the larger eigenvalue λ+n when n1/ln(λ+)/(λ-). The characteristic length for polarized light to become isotropic in its linear polarization and propagation directions is given by lp=ls/ln(1)/(λ+) where ls is the scattering mean free path.

[6] M. Xu and R. R. Alfano. Fractal mechanisms of light scattering in biological tissue and cells. Opt. Lett., 30:3051-3053, 2005.
We use fractal continuous random media to model visible and near infrared light scattering by biological tissue and cell suspensions. The powerlaw of the reduced scattering coefficient, the anisotropy factor of scattering, and the phase function are derived with good agreement with experimental results. Implications on spectroscopic tissue diagnosis are discussed.

[7] M. Xu and R. R. Alfano. Circular polarization memory of light. Phys. Rev. E, 72:065601(R), 2005.
We study the circular polarization memory of light multiply scattered by Mie particles of arbitrary size and refractive index. The loss of helicity of multiply scattered light is shown to be characterized by one parameter λx taking into account of both mechanisms (randomization of direction and randomization of helicity) for circular depolarization. The decay of helicity asymmetry follows a powerlaw λxn with the increase of the number n of scattering events when n1. The characteristic length for circular polarized light to lose its helicity is given by lx=ls/ln(1)/(λx) where ls is the mean scattering free path.

[8] Kevin G. Phillips, Min Xu, S. K. Gayen, and R. R. Alfano. Time-resolved ring structure of circularly polarized beams backscattered from forward scattering media. Opt. Express, 13:7954-7969, 2005. [ .pdf ]
The backscattering of circularly polarized light at normal incidence to a half-space of scattering particles is studied using the Electric Field Monte Carlo (EMC) method. The spatial distribution of the backscattered light intensity is examined for both the time-resolved and continuous wave cases for large particles with anisotropy factor, g, in the range 0.8 to 0.97. For the time-resolved case, the backscattered light with the same helicity as that of the incident beam (co-polarized) is found to form a ring centered on the point of incidence. The ring expands and simultaneously grows weak as time increases. The intensity of backscattered light with helicity opposite to that of the incident beam (cross-polarized) is found to exhibit a ring behavior for g >=0.85, with significant backscattering at the point of incidence. For the continuous-wave case no such ring pattern is observed in backscattered light for either helicity. The present EMC study suggests that the ring behavior can only be observed in the time domain, in contrast to previous studies of light backscattered from forward scattering media based on the scalar time-independent Fokker-Planck approximation to the radiative transfer equation. The time-dependent ring structure of backscattered light may have potential use in subsurface imaging applications.

[9] A. Katz, Alexandra Alimova, M. Xu, Paul Gottlieb, Elizabeth Rudolph, J. C. Steiner, and R. R. Alfano. In Situ determination of refractive index and size of Bacillus spores by light extinction. Opt. Lett., 30:589-591, 2005. [ .pdf ]
Light extinction measurements in the wavelength range of 400 to 1000 nm were performed in situ, on Bacillus subtilis endospores during heat shock induced activation. Simultaneous information on particle size and refractive indices during activation were calculated from the transmission spectra using the Gaussian Ray Approximation of anomalous diffraction theory. During activation, the refractive index of the core decreased from 1.51 to 1.39. while the size increased from 0.38 to 0.6 μm.

[10] W. Cai, M. Xu, and R. R. Alfano. Analytical form of the particle distribution based on the cumulant solution of the elastic Boltzmann transport equation. Phys. Rev. E, 71:041202, 2005. (10 pages). [ .pdf ]
An analytical expression of the particle distribution based on an analytical cumulant solution of the time-dependent elastic Boltzmann transport equation BTE is presented. This expression improves upon the previous second order cumulant solution of the BTE described by a Gaussian distribution in two aspects: (1) separating the ballistic component from the scattered component to ensure that the summation in expressions is convergent; and (2) enforcing the causality condition to ensure that no particle travels faster than the free speed of the particles. Time-resolved profiles obtained using the analytical form are compared with those obtained by the Monte Carlo simulation, for both transmission and backscattering. The calculating time using our analytical form is much faster than that using the Monte Carlo approach.

[11] M. Alrubaiee, M. Xu, S. K. Gayen, and R. R. Alfano. Tomographic imaging of scattering objects in tissue-like turbid media using independent component analysis. Appl. Phys. Lett., 87:191112, 2005.
[12] M. Xu. Electric field Monte Carlo for polarized light propagation in turbid media. Opt. Express, 12:6530-6539, 2004. http://www.opticsexpress.org/abstract.cfm?URI=OPEX-12-26-653. [ .pdf ]
Electric Field Monte Carlo (EMC) method for simulating polarized light propagation in turbid media is presented. Scattering of light by the particle is described by a rotation of the local coordinate system (m,n,s) with m and n the normal and binormal directions perpendicular to the photon propagation direction s and an update of the electric field E=E1m+E2n by the amplitude scattering matrix. The phase of light is accumulated according to the optical path. EMC can be used to study both coherent and incoherent properties of multiple scattering of light in turbid media. Backscattered speckle pattern and Muller matrix from a aqueous solution of polystyrene spheres in a slab geometry are computed by EMC as examples.

[13] M. Xu, W. Cai, and R. R. Alfano. Multiple passages of light through an absorption inhomogeneity in optical imaging of turbid media. Opt. Lett., 29:1757-1759, 2004. [ .pdf ]
Multiple passages of light through an absorption inhomogeneity of finite size deep within a turbid medium are analyzed for optical imaging by use of the self-energy diagram. The nonlinear correction becomes more important for an inhomogeneity of a larger size and with greater contrast in absorption with respect to the host background. The nonlinear correction factor agrees well with that from Monte Carlo simulations for cw light. The correction is approximately 50%-75% in the near infrared for an absorption inhomogeneity with the typical optical properties found in tissues and five times the size of the transport mean free path.

[14] M. Xu. Light extinction and absorption by arbitrarily oriented finite circular cylinders using geometrical path statistics of rays. Appl. Opt., 42:6710-6723, 2003. [ .pdf ]
From the geometrical path statistics of rays in an anomalous-diffraction theory (ADT) Opt. Lett. 28 , 179 (2003) closed-form expressions for the geometrical path distribution of rays and analytical formulas for the optical efficiencies of finite circular cylinders oriented in an arbitrary direction with respect to the incident light are derived. The characteristics of the shapes of the cylinders produce unique features in the geometrical path distributions of the cylinders compared with spheroids. Gaussian ray approximations, which depend only on the mean and the mean-squared geometrical paths of rays, of the optical efficiencies of finite circular cylinders and spheroids are compared with the exact optical efficiencies in ADT. The influence of the difference in shape between cylinders and spheroids on the optical efficiencies in ADT is illustrated by their respective geometrical path distributions of rays.

[15] M. Xu, M. Lax, and R. R. Alfano. Light anomalous diffraction using geometrical path statistics of rays and gaussian ray approximation. Opt. Lett, 28:179-181, 2003. [ .pdf ]
The anomalous-diffraction theory (ADT) of extinction of light by soft particles is shown to be determined by a statistical distribution of the geometrical paths of individual rays inside the particles. Light extinction depends on the mean and the mean-squared geometrical paths of the rays. Analytical formulas for optical efficiencies from a Gaussian distribution of the geometrical paths of rays are derived. This Gaussian ray approximation reduces to the exact ADT in the intermediate case of light scattering for an arbitrary soft particle and describes well the extinction of light from a system of randomly oriented and (or) polydisperse particles. The implications for probing of the sizes and shapes of particles by light extinction are discussed.

[16] M. Xu and R. R. Alfano. More on patterns in Mie scattering. Opt. Comm., 226(1-6):1-5, 2003. [ .pdf ]
The powerlaw patterns in Mie scattering (the normalized light intensity I()/I(0) vs. the dimensionless qR where is the magnitude of the wave vector transfer at the scattering angle for wavelength , and R is the radius of the nonabsorbing sphere with a relative refractive index m>1) are analyzed using the geometrical optics approximation for particles of a large size parameter. The (qR)?4 powerlaw regime is shown to be present only in Mie scattering of soft particles. The (qR)?2 powerlaw regime occurs at the scattering angles of the p=1 geometrical ray (refracted without internal reflections) from the portion of the incident beam with an incidence angle around /4 upon the particle. The (qR)?2 powerlaw regimes from particles sharing one common relative refractive index but differing in size parameters are collinear. Simple analytical expressions are derived to describe these powerlaw regimes of Mie scattering.

[17] A. Katz, A. Alimova, M. Xu, E. Rudolph, M. Shah, H. Savage, R. Rosen, S. A. McCormick, and R. R. Alfano. Bacteria size determination by elastic light scattering. IEEE JSTQE, 9:277-287, 2003. [ .pdf ]
Light extinction and angular scattering measurements were performed on three species of bacteria with different sizes and shapes ( Pseudomonas aeruginosa, Staphylococcus aureus, and Bacillus subtilis). The Gaussian ray approximation of anomalous diffraction theory was used to determine the average bacteria size from transmission measurements. A rescaled spectra combining multiple angular data was analyzed in the framework of the Rayleigh-Gans theory of light scattering. Particle shape and size distribution is then obtained from the rescale spectra. Particle characteristics (size and/or shape) retrieved from both methods are in good agreement with size and shape measured under scanning electron microscopy. These results demonstrate that light scattering may be able to detect and identify microbial contamination in the environment.

[18] W. Cai, M. Xu, and R. R. Alfano. Three dimensional radiative transfer tomography for turbid media. IEEE JSTQE, 9:189-198, 2003. [ .pdf ]
The photon distribution, as a function of position, angle, and time, is computed using the analytical cumulant solution of the Boltzmann radiative transfer equation (RTE). A linear forward model for light propagation in turbid media for three-dimensional (3-D) optical tomography is formed based on this solution. The model can be used with time resolved, continuous wave (CW), and frequency-domain measurements in parallel geometries. This cumulant forward model (CFM) is more accurate than that based on the diffusion approximation of RTE. An inverse algorithm that incorporates this CFM is developed, based on a fast 3-D hybrid-dual-Fourier tomographic approach using multiple detectors and multiple sources in parallel geometries. The inverse algorithm can produce a 3-D image of a turbid medium with more than 20 000 voxels in 1-2 min using a personal computer. A 3-D image reconstructed from simulated data is presented.

[19] M. Xu, W. Cai, M. Lax, and R. R. Alfano. Photon migration in turbid media using a cumulant approximation to radiative transfer. Phys. Rev. E, 65:066609, 2002. [ .pdf ]
A photon transport model for light migration in turbid media based on a cumulant approximation to radiative transfer is presented for image reconstruction inside an infinite medium or a bounded medium with a planar geometry. This model treats weak inhomogeneities through a Born approximation of the Boltzmann radiative transfer equation and uses the second-order cumulant solution of photon density to the Boltzmann equation as the Green's function for the uniform background. It provides the correct behavior of photon migration at early times and reduces at long times to the center-moved diffusion approximation. At early times, it agrees much better with the result from the Monte Carlo simulation than the diffusion approximation. Both approximations agree well with the Monte Carlo simulation at later times. The weight function for image reconstruction under this proposed model is shown to have a strong dependence at both early and later times on absorption and/or scattering inhomogeneities located in the propagation direction of and close to the source, or in the field of view of and close to the detector. This effect originates from the initial ballistic motion of incident photons, which is substantially underestimated by the diffusion approximation.

[20] W. Cai, M. Xu, M. Lax, and R. R. Alfano. Diffusion coefficient depends on time not on absorption. Opt. Lett., 27(9):731-733, 2002. [ .pdf ]
[21] M. Xu, M. Lax, and R. R. Alfano. Time-resolved Fourier optical diffuse tomography. J. Opt. Soc. Am. A, 18(7):1535-1542, 2001. [ .pdf ]
Time-resolved Fourier optical diffuse tomography is a novel approach for imaging of objects in a highly scattering turbid medium with use of an incident (near) plane wave. The theory of the propagation of spatial Fourier components of the scattered wave field is presented, along with a fast algorithm for three-dimensional reconstruction in a parallel planar geometry. Examples of successful reconstructions of simulated hidden absorptive or scattering objects embedded inside a human-tissue-like semi-infinite turbid medium are provided.

[22] M. Xu, W. Cai, M. Lax, and R. R. Alfano. A photon transport forward model for imaging in turbid media. Opt. Lett., 26(14):1066-1068, 2001. [ .pdf ]
A photon-transport forward model for image reconstruction in turbid media is derived that treats weak inhomogeneities through a Born approximation of the Boltzmann radiative transfer equation. This model can conveniently replace the commonly used diffusion approximation in optical tomography. An analytical expression of the background Green's function is obtained from the cumulant solution of the Boltzmann equation. Our model provides the correct behavior of photon migration at early times and reduces at long times to the center-moved diffusion approximation. Numerical comparisons between this model and the standard and center-moved diffusion models are presented.

[23] W. Cai, S. K. Gayen, M. Xu, M. Zevallos, M. Alrubaiee, M. Lax, and R. R. Alfano. Optical tomographic image reconstruction from ultrafast time-sliced transmission measurements. Appl. Opt., 38(19):4237-4246, 1999. [ .pdf ]
Optical imaging and localization of objects inside a highly scattering medium, such as a tumor in the breast, is a challenging problem with many practical applications. Conventional imaging methods generally provide only two-dimensional (2-D) images of limited spatial resolution with little diagnostic ability. Here we present an inversion algorithm that uses time-resolved transillumination measurements in the form of a sequence of picosecond-duration intensity patterns of transmitted ultrashort light pulses to reconstruct three-dimensional (3-D) images of an absorbing object located inside a slab of a highly scattering medium. The experimental arrangement used a 3-mm-diameter collimated beam of 800-nm, 150-fs, 1-kHz repetition rate light pulses from a Ti:sapphire laser and amplifier system to illuminate one side of the slab sample. An ultrafast gated intensified camera system that provides a minimum FWHM gate width of 80 ps recorded the 2-D intensity patterns of the light transmitted through the opposite side of the slab. The gate position was varied in steps of 100 ps over a 5-ns range to obtain a sequence of 2-D transmitted light intensity patterns of both less-scattered and multiple-scattered light for image reconstruction. The inversion algorithm is based on the diffusion approximation of the radiative transfer theory for photon transport in a turbid medium. It uses a Green s function perturbative approach under the Rytov approximation and combines a 2-D matrix inversion with a one-dimensional Fourier-transform inversion to achieve speedy 3-D image reconstruction. In addition to the lateral position, the method provides information about the axial position of the object as well, whereas the 2-D reconstruction methods yield only lateral position.

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